Correct coordinates in gtfToBed()

Aki Nakao pointed out a problem in gtfToBed(). In earlier versions the function did a basic reformatting without adjusting the coordinate system between gtf and bed (gtf is 1-based, bed however is 0-based).

The function got now the option correctBases=TRUE so that by default one base is substracted from both, that start and the end coordinated to correct for the different coordinate systems

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