Category Archives: Publication

importSTARLog() updated

Posted on March 23, 2019 by fischuu

I updated today the importSTARLog function so that it imports now both, the final.log and the log files. In addition, it can do that for all files within a folder and its subfolders. The next thing will be to write … Continue reading →

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seqlength() function added

Posted on March 19, 2019 by fischuu

I added the seqlength() function to get the sequence length of a fa-object. This is in principle just a wrapper around the nchar() base-R command, but having an own function for this help then maybe later to write more sophisticated … Continue reading →

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importFA() update

Posted on March 19, 2019 by fischuu

The function importFA() does not rely anymore on alternating rows between sequence and identifer, but can import now any kind of fasta file.

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New versions on Cran

Posted on February 6, 2019 by fischuu

Today the versions 0.2.8 for GenomicTools and 0.1.4 for GenomicTools.fileHandler have been released with a couple of bugfixes and a list of new features. In details we have * prereadGTF() function added * importGTF() function can now merge several gtfs … Continue reading →

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Package manuscript published

Posted on September 11, 2017 by fischuu

The package description in ‘Computer Methods and Programs in Biomedicine’ was published here.  Until 23.10.2017 it can be downloaded here.

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